Nice collaboration with Luay Nakhleh and Hamim Zafar labs on scalable single-cell phylogenetic inference:
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-c…
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SIEVE: joint inference of single‑nucleotide
variants and cell phylogeny from single‑cell
DNA sequencing data
A very nice collaboration with the Szczurek and Beerenwinkel labs under the Computational ONcology TRaining Alliance Innovative Training (CONTRA) Network.…
Continue ReadingGenomic characterization of circulating tumor cells
Today out in Genomics! We found substantial differences in the mutational loads of CTC pools obtained using different CTC-capture methods.CTC…
Continue ReadingOn the root of eukaryotes
We started this collaboration with the Katz lab and today is finally out! Using phylogenomics, we propose that the eukaryote…
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