Nice collaboration with Luay Nakhleh and Hamim Zafar labs on scalable single-cell phylogenetic inference: Phylovar: toward scalable phylogeny-aware inference of…
Continue Readingmini-review on single-cell DNA variant callers
https://doi.org/10.1016/j.csbj.2022.06.013 Here, we review current approaches for single-cell variant calling, emphasizing single nucleotide variants. We highlight their potential benefits and shortcomings…
Continue Readingphylogenetic origins of relapse using single-cell data
Our phylogenetic analysis of single cells exposes how, where and when malignant cells survive treatment in a personalized manner in…
Continue ReadingmtDNA single-cell paper
In CRC, mtDNA heteroplasmy mainly arises from differences among cells, but in some cases, the ancestral tumor cell can host…
Continue ReadingUnderstanding SARS-CoV-2 transmission
Together with colleagues at a local hospital, here we show that is not easy to figure out with just genomics…
Continue ReadingCellPhy paper
Finally out! ML inference of single-cell phylogenies https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02583-w Download CellPhy at: https://github.com/amkozlov/cellphy
Continue ReadingAECC grant: Microbiome as biomarker for CRC
We want to thank the Spanish Cancer Association (AECC) for awarding us a research grant to study the role of…
Continue ReadingNew PhD fellowships
Congratulations to Pilar Gallego and Pablo Fonseca for their Xunta de Galicia Ph.D. fellowships! Pilar is already working on SARS-CoV-2…
Continue ReadingJob offer: Technician in molecular and cellular biology, University of Vigo
Description: A position is offered as a molecular and cellular biology laboratory technician to work in the MICINN project (PID2019-106247GB-I00)…
Continue ReadingNew website (under construction) for the Posada lab!
We have started a new web site for the Posada lab. Hope you like it!
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