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dposada June 20, 2022

mini-review on single-cell DNA variant callers

https://doi.org/10.1016/j.csbj.2022.06.013

Here, we review current approaches for single-cell variant calling, emphasizing single nucleotide variants. We highlight their potential benefits and shortcomings to help users choose a suitable tool for their data at hand.

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dposada - 13 posts Uncategorized

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phylogenetic origins of relapse using single-cell data
Scalable single-cell phylogenies

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CellPhy paper

Finally out! ML inference of single-cell phylogenies https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02583-w Download CellPhy at: https://github.com/amkozlov/cellphy

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AECC grant: Microbiome as biomarker for CRC

We want to thank the Spanish Cancer Association (AECC) for awarding us a research grant to study the role of…

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New PhD fellowships

Congratulations to Pilar Gallego and Pablo Fonseca for their Xunta de Galicia Ph.D. fellowships! Pilar is already working on SARS-CoV-2…

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Recent Posts

  • SIEVE: joint inference of single‑nucleotide
    variants and cell phylogeny from single‑cell
    DNA sequencing data
    December 2, 2022
  • Genomic characterization of circulating tumor cells October 11, 2022
  • On the root of eukaryotes August 11, 2022
  • Scalable single-cell phylogenies June 28, 2022
  • mini-review on single-cell DNA variant callers June 20, 2022

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    David Posada Follow

    A computational evolutionary biologist lately interested in cancer evolution.

    dposada_
    Retweet on Twitter David Posada Retweeted
    andreasottoriva Andrea Sottoriva @andreasottoriva ·
    6 Mar

    Open positions on in my lab @humantechnopole in #Milan- #DataScience and #Computational #Genomics for #CancerResearch, last three days to apply! https://twitter.com/AndreaSottoriva/status/1625760538083860481

    Andrea Sottoriva @AndreaSottoriva

    New open positions on Computational Cancer #Evolution in my lab @humantechnopole in #Milan- #DataScience for #CancerResearch, join us!
    -> https://careers.humantechnopole.it/o/data-scientist-in-computational-cancer-evolution-sottoriva-group
    -> https://careers.humantechnopole.it/o/postdoc-in-computational-cancer-evolution-sottoriva-group
    #MachineLearning #Bioinformatics #oncology #SingleCell #liquidbiopsy #Genomics

    Reply on Twitter 1632674118737752064 Retweet on Twitter 1632674118737752064 23 Like on Twitter 1632674118737752064 36 Twitter 1632674118737752064
    dposada_ David Posada @dposada_ ·
    2 Mar

    👉Nice opportunity at the Stamatakis lab in Crete!

    Alexis Stamatakis @AlexisCompBio

    There are two PhD positions with competitive salaries available in my new, second research group (https://www.biocomp.gr/) in Crete. We are looking for computer scientists, Bioinformaticians or "programming Biologists".

    To apply https://www.ics.forth.gr/jobs (vacancy ID: ICS-2010)

    Reply on Twitter 1631232983012200449 Retweet on Twitter 1631232983012200449 Like on Twitter 1631232983012200449 2 Twitter 1631232983012200449
    Retweet on Twitter David Posada Retweeted
    agraudenzi Alex Graudenzi @agraudenzi ·
    20 Feb

    Registration is open for the 2023 Como School and Workshop on #Cancer #Evolution

    https://csce2023.lakecomoschool.org/

    A list of fantastic speakers, a beautiful venue and a great networking opportunity for both dry- and wet-lab scientists working in cancer research! https://twitter.com/AGraudenzi/status/1614951602762256385

    Alex Graudenzi @AGraudenzi

    .@MarcoxaShowlow @bud_mishra @AndreaSottoriva and I are glad to announce the 2023 Como School on #Cancer #Evolution!

    https://csce2023.lakecomoschool.org

    Amazing list of speakers!
    C Cantor @landau_lab @IulianaLaza R Murphy @Pelicci1 @dposada_ @dany9685 @maria_rescigno @ewa_szczurek + more!

    Reply on Twitter 1627736729196105739 Retweet on Twitter 1627736729196105739 4 Like on Twitter 1627736729196105739 8 Twitter 1627736729196105739
    dposada_ David Posada @dposada_ ·
    20 Jan

    Very nice opportunity in Crete with the great @AlexisCompBio ! Don't miss it!

    Alexis Stamatakis @AlexisCompBio

    Two PostDoc positions are available in my new, second research group (https://www.biocomp.gr/) in Crete for Computer Scientists, Bioinformaticians, or "programming Biologists"

    To apply follow the links:

    https://www.ics.forth.gr/jobs vacancy ID: ICS-1980

    https://euraxess.ec.europa.eu/jobs/61879

    Reply on Twitter 1616378704476643330 Retweet on Twitter 1616378704476643330 Like on Twitter 1616378704476643330 3 Twitter 1616378704476643330
    Retweet on Twitter David Posada Retweeted
    agraudenzi Alex Graudenzi @agraudenzi ·
    16 Jan

    .@MarcoxaShowlow @bud_mishra @AndreaSottoriva and I are glad to announce the 2023 Como School on #Cancer #Evolution!

    https://csce2023.lakecomoschool.org

    Amazing list of speakers!
    C Cantor @landau_lab @IulianaLaza R Murphy @Pelicci1 @dposada_ @dany9685 @maria_rescigno @ewa_szczurek + more!

    Reply on Twitter 1614951602762256385 Retweet on Twitter 1614951602762256385 17 Like on Twitter 1614951602762256385 36 Twitter 1614951602762256385
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